Chip-atlas
http://chip-atlas.org/view?id=SRX1457831 WebFeb 5, 2024 · @inutano (Tazro Inutano Ohta) of the ChIP-Atlas project suggested I contact you. I hope this is the right forum in which to do so! "View on IGV" is an option on the ChIP-Atlas Peak Browser.Clicking this button seems to initiate communication between the chip-atlas webserver and IGV, and permit subsequent region-of-interest queries from IGV to …
Chip-atlas
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WebApr 13, 2024 · The ChIP-Atlas dataset represents TFBSs identified in MCF7 cells subjected to a diverse range of experimental conditions, including hormone treatments with … WebFeb 17, 2016 · ChIP-Atlas is an integrative and comprehensive database for visualizing and making use of public ChIP-seq data (over 35,000 experiments).The four main featur...
WebGSM1959629: ChIP-Seq MLL AF9-Jmjd1c2; Mus musculus; ChIP-Seq Sample information curated by ChIP-Atlas Antigen Antigen Class Histone Antigen H3K9me2. Cell type Cell type Class Blood Cell type Bone Marrow Cells MeSH Description WebSample information curated by ChIP-Atlas Antigen Antigen Class TFs and others Antigen FOXA1. Cell type Cell type Class Breast Cell type MCF-7 Primary Tissue Breast Site of Extraction Pleura Tissue Diagnosis ... chip antibody ab 5089 (Abcam) Sequenced DNA Library library_strategy ChIP-Seq library_source
WebChIP-Seq: ChIPed DNA was processed using Takara SMRTer ThruPLEX DNA-seq Kit. Briefly, DNA was end-repaired and ligated to stem-loop adaptors. Then DNA was PCR amplified with Illumina-compatible primers for 7-11 cycles and library fragments of 200 to 400 bp were selected using Ampure XP beads. Weblibrary_strategy ChIP-Seq library_source GENOMIC library_selection ChIP library_construction_protocol For ChIP-Seq, 40 mio cells per sample or 20 mio cells in case of H3K4me1/me2/me3 were fixed as mentioned in the sample section either for 30 min in 2 mM DSG (#C1104 ProteoChem) and 10 min 1% MeOH-free formaldehye (#2890, …
WebNov 9, 2024 · Overview of the ChIP-Atlas data set and computational processing. A Numbers of ChIP-seq and DNase-seq experiments recorded in ChIP-Atlas (as of May 2024), indicating the proportion of the data for each species derived from ENCODE, Roadmap Epigenomics, and other projects. B Cumulative number of SRX-based …
WebChIP-Atlas is able to show alignment and peak-call results for all public ChIP-seq and DNase-seq data archived in the NCBI Sequence Read Archive (SRA), which … shoe boot for broken footWebNov 9, 2024 · ChIP-Atlas is able to show alignment and peak-call results for all public ChIP-seq and DNase-seq data archived in the NCBI Sequence Read Archive (SRA), which encompasses data derived from GEO, … race heritage armorWebNov 9, 2024 · ChIP-Atlas is superior to other platforms in terms of data number and functionality for data mining across thousands of ChIP-seq experiments, and it provides … shoe boot covers for indoorsWebNational Center for Biotechnology Information racehill community orchardWebChIP-Atlas is a database collecting the bed files calculated from the ChIP-Seq, DNase-Seq, ATAC-Seq, and Bisulfite-seq data archived in Sequence Read Archive (SRA). The … race highlights 2023 saudi arabian grand prixhttp://chip-atlas.org/view?id=SRX484471 race heritageWebNov 9, 2024 · ChIP‐Atlas is superior to other platforms in terms of data number and functionality for data mining across thousands of ChIP‐seq experiments, and it provides … racehill